Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284499-SRR8984910/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  256,918,678
 Normal Paired: 242,778,631 (94.50%)
 Chimeric Paired: 9,941,320 (3.87%)
 Chimeric Ambiguous: 2,877,063 (1.12%)
 Unmapped: 1,321,664 (0.51%)
 Ligation Motif Present: 60,683 (0.02%)
Alignable (Normal+Chimeric Paired): 252,719,951 (98.37%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-25T16:08:56,587]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 69,518,102 (27.06%)
PCR Duplicates: 183,201,849 (71.31%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 71,619,784
Intra-fragment Reads: 28,025,212 (10.91% / 40.31%)
Below MAPQ Threshold: 18,495,516 (7.20% / 26.61%)
Hi-C Contacts: 22,997,374 (8.95% / 33.08%)
 Ligation Motif Present: 15,750  (0.01% / 0.02%)
 3' Bias (Long Range): 78% - 22%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 4,048,131  (1.58% / 5.82%)
Intra-chromosomal: 18,949,243  (7.38% / 27.26%)
Short Range (<20Kb): 10,982,066  (4.27% / 15.80%)
Long Range (>20Kb): 7,967,088  (3.10% / 11.46%)